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phat-5 ShKT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178811, updated on 2-Nov-2024

Summary

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Official Symbol
phat-5
Official Full Name
ShKT domain-containing protein
Primary source
WormBase:WBGene00020242
Locus tag
CELE_T05B4.11
See related
AllianceGenome:WB:WBGene00020242
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in nematode pharyngeal gland morphogenesis. Is expressed in g1AL and g1AR. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See phat-5 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (4121489..4122515, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ShKT domain-containing protein Neighboring gene ShKT domain-containing protein Neighboring gene ShKT domain-containing protein Neighboring gene ncRNA Neighboring gene ShKT domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptional regulation of HLH-6-independent and subtype-specific genes expressed in the Caenorhabditis elegans pharyngeal glands. Ghai V, et al. Mech Dev, 2012 Sep-Dec. PMID 22759833
  2. The HLH-6 transcription factor regulates C. elegans pharyngeal gland development and function. Smit RB, et al. PLoS Genet, 2008 Oct. PMID 18927627, Free PMC Article
  3. A lineage-resolved cartography of microRNA promoter activity in C. elegans empowers multidimensional developmental analysis. Xu W, et al. Nat Commun, 2024 Mar 30. PMID 38555276, Free PMC Article
  4. Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways. Duchaine TF, et al. Cell, 2006 Jan 27. PMID 16439208
  5. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in nematode pharyngeal gland morphogenesis IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
ShKT domain-containing protein
NP_504148.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    4121489..4122515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071747.7 → NP_504148.1  ShKT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504148.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16420
    Conserved Domains (1) summary
    pfam01549
    Location:122 → 154
    ShK; ShK domain-like
Nucleotide Protein
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