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Y61A9LA.3 ALO domain-containing protein;Autophagy-related protein 101;C2H2-type domain-containing protein;NR LBD domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178848, updated on 18-Sep-2024

Summary

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Official Symbol
Y61A9LA.3
Official Full Name
ALO domain-containing protein;Autophagy-related protein 101;C2H2-type domain-containing protein;NR LBD domain-containing protein
Primary source
WormBase:WBGene00022015
Locus tag
CELE_Y61A9LA.3
See related
AllianceGenome:WB:WBGene00022015
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Y61A9LA.3 in Genome Data Viewer
Location:
chromosome: V
Exon count:
16
Sequence:
Chromosome: V; NC_003283.11 (4571133..4585172)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene GED domain-containing protein Neighboring gene Zinc finger CCCH domain-containing protein 14 Neighboring gene Uncharacterized protein Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene ncRNA Neighboring gene transcellular chaperone signaling (x)cross tissue

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional genomic analysis of RNA interference in C. elegans. Kim JK, et al. Science, 2005 May 20. PMID 15790806
  2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
ALO domain-containing protein;Autophagy-related protein 101;C2H2-type domain-containing protein;NR LBD domain-containing protein
NP_001338802.1
  • Confirmed by transcript evidence
NP_001338841.1
  • Confirmed by transcript evidence
NP_001338842.1
  • Confirmed by transcript evidence
NP_001338843.1
  • Partially confirmed by transcript evidence
NP_504241.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    4571133..4585172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071840.4 → NP_504241.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504241.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L071
    Conserved Domains (3) summary
    pfam05672
    Location:413 → 524
    MAP7; MAP7 (E-MAP-115) family
    cd16269
    Location:480 → 491
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:423 → 509
    GBP_C; Guanylate-binding protein, C-terminal domain

  2. NM_001351865.5 → NP_001338802.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MXS5
    Conserved Domains (1) summary
    cl25742
    Location:415 → 526
    ERM; Ezrin/radixin/moesin family

  3. NM_001351866.4 → NP_001338843.1  NR LBD domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1X7RCX1

  4. NM_001351867.3 → NP_001338841.1  Autophagy-related protein 101 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1X7RBU1

  5. NM_001351868.3 → NP_001338842.1  ALO domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1X7RBQ5

RNA

  1. NR_147823.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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