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ccep-97 uncharacterized protein [ Caenorhabditis elegans ]

Gene ID: 178871, updated on 2-Nov-2024

Summary

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Official Symbol
ccep-97
Official Full Name
uncharacterized protein
Primary source
WormBase:WBGene00019842
Locus tag
CELE_R02F11.4
See related
AllianceGenome:WB:WBGene00019842
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable alpha-tubulin binding activity and dynein heavy chain binding activity. Predicted to be involved in outer dynein arm assembly. Predicted to be active in cytoplasm. Orthologous to human CEP97 (centrosomal protein 97). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ccep-97 in Genome Data Viewer
Location:
chromosome: V
Exon count:
8
Sequence:
Chromosome: V; NC_003283.11 (4810865..4818663, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene CC domain-containing protein Neighboring gene Cation efflux protein cytoplasmic domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Adenylosuccinate synthetase Neighboring gene Heat shock protein hsp-6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
  2. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
  3. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
  4. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  5. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables alpha-tubulin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables dynein heavy chain binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in outer dynein arm assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_504289.1
  • Confirmed by transcript evidence;
    Product from WormBase gene class ccep; C. elegans CEntrosomal Protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    4810865..4818663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071888.5 → NP_504289.1  uncharacterized protein CELE_R02F11.4 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504289.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16366
    Conserved Domains (5) summary
    cd00116
    Location:118 → 245
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:57 → 78
    LRR_RI; leucine-rich repeat [structural motif]
    pfam10805
    Location:480 → 557
    DUF2730; Protein of unknown function (DUF2730)
    pfam12799
    Location:163 → 205
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:143 → 197
    LRR_8; Leucine rich repeat
Nucleotide Protein
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