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ZK1055.7 Protein F37C4.5 [ Caenorhabditis elegans ]

Gene ID: 179051, updated on 2-Nov-2024

Summary

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Official Symbol
ZK1055.7
Official Full Name
Protein F37C4.5
Primary source
WormBase:WBGene00022848
Locus tag
CELE_ZK1055.7
See related
AllianceGenome:WB:WBGene00022848
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in innate immune response. Predicted to be active in mitochondrion. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ZK1055.7 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (6602720..6605375, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase domain-containing protein Neighboring gene HoloCentric chromosome binding Protein Neighboring gene DUF4139 domain-containing protein;Protein F37C4.5;Transposase Neighboring gene HAT C-terminal dimerization domain-containing protein Neighboring gene ncRNA Neighboring gene Cathepsin B-like cysteine proteinase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
  2. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
  3. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
  4. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  5. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response HEP PubMed 
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Protein F37C4.5
NP_504680.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    6602720..6605375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072279.5 → NP_504680.1  Protein F37C4.5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504680.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O76449
    Conserved Domains (1) summary
    TIGR02231
    Location:16 → 565
    TIGR02231; conserved hypothetical protein
Nucleotide Protein
Heading Accession and Version

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