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attf-2 AT hook Transcription Factor family [ Caenorhabditis elegans ]

Gene ID: 179106, updated on 18-Sep-2024

Summary

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Official Symbol
attf-2
Official Full Name
AT hook Transcription Factor family
Primary source
WormBase:WBGene00017317
Locus tag
CELE_F09G2.9
See related
AllianceGenome:WB:WBGene00017317
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See attf-2 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (7193766..7196137, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene putative cleavage and polyadenylation specificity factor subunit 2 Neighboring gene Phosphate transporter Neighboring gene putative phospholipase D F09G2.8 Neighboring gene ncRNA Neighboring gene Protein CNPPD1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification. Zhang C, et al. Curr Biol, 2012 May 22. PMID 22542102, Free PMC Article
  2. Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states. Tan D, et al. Elife, 2016 Mar 8. PMID 26952210, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
AT hook Transcription Factor family
NP_504825.1
  • Product from WormBase gene class attf;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    7193766..7196137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072424.8 → NP_504825.1  AT hook Transcription Factor family [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504825.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O17406
    Conserved Domains (2) summary
    PRK13108
    Location:57 → 186
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    PTZ00108
    Location:136 → 381
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
Nucleotide Protein
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