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ZC190.4 SAM domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179248, updated on 2-Nov-2024

Summary

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Official Symbol
ZC190.4
Official Full Name
SAM domain-containing protein
Primary source
WormBase:WBGene00022538
Locus tag
CELE_ZC190.4
See related
AllianceGenome:WB:WBGene00022538
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to be located in cytoplasm. Predicted to be active in P-body. Orthologous to several human genes including SAMD4B (sterile alpha motif domain containing 4B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ZC190.4 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (8666065..8671680)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene G protein-coupled receptor Neighboring gene Serpentine receptor class gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
  
involved_in nuclear-transcribed mRNA poly(A) tail shortening IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SAM domain-containing protein
NP_505233.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    8666065..8671680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072832.9 → NP_505233.2  SAM domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505233.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O76699
    Conserved Domains (1) summary
    cd09557
    Location:186 → 248
    SAM_Smaug; SAM domain of Smaug subfamily
Nucleotide Protein
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