U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

F40F9.10 tRNA wybutosine-synthesizing protein 2 homolog [ Caenorhabditis elegans ]

Gene ID: 179363, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
F40F9.10
Official Full Name
tRNA wybutosine-synthesizing protein 2 homolog
Primary source
WormBase:WBGene00009586
Locus tag
CELE_F40F9.10
See related
AllianceGenome:WB:WBGene00009586
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation and wybutosine biosynthetic process. Predicted to be active in cytoplasm. Is expressed in anal depressor muscle; body wall musculature; and pharynx. Orthologous to human TRMT12 (tRNA methyltransferase 12 homolog). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See F40F9.10 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (9711447..9713632, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein her-1 Neighboring gene Protein lifeguard 1-like Neighboring gene Transmembrane BAX inhibitor motif-containing protein 4 Neighboring gene PDZ domain-containing protein Neighboring gene ncRNA Neighboring gene Seven TM Receptor

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tRNA methylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
  
involved_in wybutosine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
tRNA wybutosine-synthesizing protein 2 homolog
NP_505502.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    9711447..9713632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073101.5 → NP_505502.2  tRNA wybutosine-synthesizing protein 2 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505502.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20240
    Conserved Domains (1) summary
    COG2520
    Location:31 → 255
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools