B0024.11 Putative pseudouridine synthase B0024.11 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: B0024.11
Official Full Name: Putative pseudouridine synthase B0024.11
Primary source: WormBase:WBGene00007101
Locus tag: CELE_B0024.11
See related: AllianceGenome:WB:WBGene00007101
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable pseudouridine synthase activity. Predicted to be involved in pseudouridine synthesis. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in intellectual developmental disorder with abnormal behavior, microcephaly, and short stature. Orthologous to human PUS7 (pseudouridine synthase 7). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See B0024.11 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 6

Sequence:: Chromosome: V; NC_003283.11 (10317492..10319534, complement)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

B0024.12 (e-PCR)
- UniSTS:320679

B0024.11 (e-PCR)
- UniSTS:307170

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables isomerase activity	IEA Inferred from Electronic Annotation more info
enables pseudouridine synthase activity	IBA Inferred from Biological aspect of Ancestor more info
enables pseudouridine synthase activity	IEA Inferred from Electronic Annotation more info
enables tRNA pseudouridine synthase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in RNA modification	IEA Inferred from Electronic Annotation more info
involved_in pseudouridine synthesis	IBA Inferred from Biological aspect of Ancestor more info
involved_in pseudouridine synthesis	IEA Inferred from Electronic Annotation more info
involved_in tRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: Putative pseudouridine synthase B0024.11

NP_505653.1

Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

10317492..10319534 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_073252.6 → NP_505653.1 Putative pseudouridine synthase B0024.11 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_505653.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q17426

Conserved Domains (1) summary

cd02576
Location:111 → 531

PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family