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fig-1 C6 domain-containing protein;ShKT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179523, updated on 2-Nov-2024

Summary

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Official Symbol
fig-1
Official Full Name
C6 domain-containing protein;ShKT domain-containing protein
Primary source
WormBase:WBGene00009968
Locus tag
CELE_F53B7.5
See related
AllianceGenome:WB:WBGene00009968
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Is expressed in amphid sheath cell and phasmid sheath cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See fig-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
22
Sequence:
Chromosome: V; NC_003283.11 (10970345..10981213, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene putative elongation factor 1-gamma Neighboring gene ncRNA Neighboring gene protein of unknown function DB domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Glia are essential for sensory organ function in C. elegans. Bacaj T, et al. Science, 2008 Oct 31. PMID 18974354, Free PMC Article
  2. Caenorhabditis elegans homologue of Prox1/Prospero is expressed in the glia and is required for sensory behavior and cold tolerance. Kage-Nakadai E, et al. Genes Cells, 2016 Sep. PMID 27402188
  3. Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. Valperga G, et al. Elife, 2022 Feb 24. PMID 35201977, Free PMC Article
  4. The glia of Caenorhabditis elegans. Oikonomou G, et al. Glia, 2011 Sep. PMID 21732423, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C6 domain-containing protein;ShKT domain-containing protein
NP_001122946.2
  • Confirmed by transcript evidence
NP_001122947.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    10970345..10981213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129474.4 → NP_001122946.2  ShKT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122946.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H9G2W3
    Conserved Domains (1) summary
    smart00209
    Location:63 → 112
    TSP1; Thrombospondin type 1 repeats

  2. NM_001129475.3 → NP_001122947.2  C6 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EGB4
    Conserved Domains (5) summary
    smart00209
    Location:2823 → 2872
    TSP1; Thrombospondin type 1 repeats
    smart01048
    Location:1637 → 1728
    C6; This domain of unknown function is found in a C. elegans protein
    pfam01681
    Location:962 → 1037
    C6; C6 domain
    NF033201
    Location:870 → 946
    Vip_LPXTG_Lm; cell invasion LPXTG protein Vip
    cl07834
    Location:2461 → 2551
    C6; C6 domain
Nucleotide Protein
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