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isy-1 Protein isy-1 [ Caenorhabditis elegans ]

Gene ID: 179524, updated on 2-Nov-2024

Summary

Official Symbol
isy-1
Official Full Name
Protein isy-1
Primary source
WormBase:WBGene00009966
Locus tag
CELE_F53B7.3
See related
AllianceGenome:WB:WBGene00009966
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in regulation of primary miRNA processing. Located in nucleus. Is expressed in several structures, including hypodermis and intestine. Orthologous to human ISY1 (ISY1 splicing factor homolog) and ISY1-RAB43 (ISY1-RAB43 readthrough). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See isy-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (10999663..11000699, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene ncRNA Neighboring gene Activin_recp domain-containing protein Neighboring gene Low-density lipoprotein receptor domain class A Neighboring gene ncRNA

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of Prp19 complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of post-mRNA release spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of post-spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
Protein isy-1
NP_505803.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    10999663..11000699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073402.7NP_505803.1  Protein isy-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505803.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q20716
    Conserved Domains (1) summary
    pfam06246
    Location:1264
    Isy1; Isy1-like splicing family