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atp-5 ATP synthase subunit d, mitochondrial [ Caenorhabditis elegans ]

Gene ID: 179541, updated on 2-Nov-2024

Summary

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Official Symbol
atp-5
Official Full Name
ATP synthase subunit d, mitochondrial
Primary source
WormBase:WBGene00007385
Locus tag
CELE_C06H2.1
See related
AllianceGenome:WB:WBGene00007385
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in proton motive force-driven ATP synthesis. Predicted to be located in mitochondrial inner membrane. Predicted to be part of proton-transporting ATP synthase complex, coupling factor F(o). Orthologous to human ATP5PD (ATP synthase peripheral stalk subunit d). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See atp-5 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (11122901..11123867, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Ubiquitin carboxyl-terminal hydrolase 7 Neighboring gene MRG domain-containing protein Neighboring gene O-acyltransferase;diacylglycerol O-acyltransferase Neighboring gene Late endosomal/lysosomal adaptor and MAPK and MTOR activator 5 Neighboring gene START domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Enhancement in the ATP level and antioxidant capacity of Caenorhabditis elegans under continuous exposure to extremely low-frequency electromagnetic field for multiple generations. Wang Y, et al. Int J Radiat Biol, 2020 Dec. PMID 32991227
  2. ASB-1, a germline-specific isoform of mitochondrial ATP synthase b subunit, is required to maintain the rate of germline development in Caenorhabditis elegans. Kawasaki I, et al. Mech Dev, 2007 Mar. PMID 17223323
  3. A proteomic view of Caenorhabditis elegans caused by short-term hypoxic stress. Li H, et al. Proteome Sci, 2010 Sep 21. PMID 20858264, Free PMC Article
  4. Mitochondrial Permeability Uncouples Elevated Autophagy and Lifespan Extension. Zhou B, et al. Cell, 2019 Apr 4. PMID 30929899, Free PMC Article
  5. Bacterial peptidoglycan muropeptides benefit mitochondrial homeostasis and animal physiology by acting as ATP synthase agonists. Tian D, et al. Dev Cell, 2022 Feb 7. PMID 35045336, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
contributes_to proton-transporting ATP synthase activity, rotational mechanism IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in proton motive force-driven ATP synthesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
  
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
part_of proton-transporting ATP synthase complex, coupling factor F(o) IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP synthase subunit d, mitochondrial
NP_505829.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    11122901..11123867 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073428.7 → NP_505829.1  ATP synthase subunit d, mitochondrial [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505829.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q17763
    Conserved Domains (1) summary
    pfam05873
    Location:13 → 155
    Mt_ATP-synt_D; ATP synthase D chain, mitochondrial (ATP5H)
Nucleotide Protein
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