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pqn-53 Prion-like-(Q/N-rich)-domain-bearing protein [ Caenorhabditis elegans ]

Gene ID: 179656, updated on 2-Nov-2024

Summary

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Official Symbol
pqn-53
Official Full Name
Prion-like-(Q/N-rich)-domain-bearing protein
Primary source
WormBase:WBGene00004138
Locus tag
CELE_R07B7.3
See related
AllianceGenome:WB:WBGene00004138
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pqn-53 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (12063476..12065391, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene PUM-HD domain-containing protein Neighboring gene Chloride channel protein Neighboring gene ncRNA Neighboring gene FAD-binding domain-containing protein Neighboring gene Kynurenine 3-monooxygenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional genomic analysis of RNA interference in C. elegans. Kim JK, et al. Science, 2005 May 20. PMID 15790806
  2. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
  3. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
  4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
Prion-like-(Q/N-rich)-domain-bearing protein
NP_506023.2
  • Product from WormBase gene class pqn;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    12063476..12065391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073622.6 → NP_506023.2  Prion-like-(Q/N-rich)-domain-bearing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506023.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21793

RNA

  1. NR_024311.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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