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somi-1 Zinc finger protein somi-1 [ Caenorhabditis elegans ]

Gene ID: 179819, updated on 2-Nov-2024

Summary

Official Symbol
somi-1
Official Full Name
Zinc finger protein somi-1
Primary source
WormBase:WBGene00010868
Locus tag
CELE_M04G12.4
See related
AllianceGenome:WB:WBGene00010868
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in cell differentiation. Located in nucleus. Is expressed in several structures, including gonad; hypodermal cell; intestine; neurons; and vulval precursor cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See somi-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (13386058..13391395, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene 7TM GPCR serpentine receptor class x (Srx) domain-containing protein Neighboring gene IRF-2BP1_2 domain-containing protein;Interferon regulatory factor 2-binding protein 1 & 2 zinc finger domain-containing protein;RING-type domain-containing protein Neighboring gene cathepsin X Neighboring gene Soluble guanylate cyclase gcy-34 Neighboring gene ncRNA Neighboring gene ZP domain-containing protein Neighboring gene ncRNA Neighboring gene NADP-dependent oxidoreductase domain-containing protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Zinc finger protein somi-1
NP_001360520.1
  • Confirmed by transcript evidence
NP_001360558.1
  • Confirmed by transcript evidence
NP_001379322.1
  • Confirmed by transcript evidence
NP_506320.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13386058..13391395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073919.6NP_506320.3  Zinc finger protein somi-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506320.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EBR5
    Conserved Domains (1) summary
    pfam13909
    Location:454478
    zf-H2C2_5; C2H2-type zinc-finger domain
  2. NM_001373144.3NP_001360520.1  Zinc finger protein somi-1 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A486WWJ9, A0A486WWS8, G5EBR5, Q8I4H1
    Conserved Domains (1) summary
    pfam13909
    Location:454473
    zf-H2C2_5; C2H2-type zinc-finger domain
  3. NM_001392639.1NP_001379322.1  Zinc finger protein somi-1 [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    pfam13909
    Location:425444
    zf-H2C2_5; C2H2-type zinc-finger domain
  4. NM_001373145.2NP_001360558.1  Zinc finger protein somi-1 [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    pfam13909
    Location:425444
    zf-H2C2_5; C2H2-type zinc-finger domain