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ttr-44 Transthyretin-like family protein [ Caenorhabditis elegans ]

Gene ID: 179835, updated on 2-Nov-2024

Summary

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Official Symbol
ttr-44
Official Full Name
Transthyretin-like family protein
Primary source
WormBase:WBGene00008341
Locus tag
CELE_C56A3.2
See related
AllianceGenome:WB:WBGene00008341
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in cell surface and extracellular region. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ttr-44 in Genome Data Viewer
Location:
chromosome: V
Exon count:
2
Sequence:
Chromosome: V; NC_003283.11 (13529545..13530744, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Putative selenium-binding protein Neighboring gene Serpentine Receptor, class Z Neighboring gene pseudo Neighboring gene pseudo Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein;G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C. elegans monitor energy status via the AMPK pathway to trigger innate immune responses against bacterial pathogens. Ju S, et al. Commun Biol, 2022 Jun 30. PMID 35773333, Free PMC Article
  2. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transthyretin-like family protein
NP_001256514.1
  • Confirmed by transcript evidence
NP_001367269.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13529545..13530744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269585.3 → NP_001256514.1  Transthyretin-like family protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256514.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18878
    Conserved Domains (1) summary
    pfam01060
    Location:25 → 104
    TTR-52; Transthyretin-like family

  2. NM_001380804.1 → NP_001367269.1  Transthyretin-like family protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    E3W741
    Conserved Domains (1) summary
    pfam01060
    Location:13 → 92
    TTR-52; Transthyretin-like family
Nucleotide Protein
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