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C56A3.4 RING-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179836, updated on 2-Nov-2024

Summary

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Official Symbol
C56A3.4
Official Full Name
RING-type domain-containing protein
Primary source
WormBase:WBGene00008343
Locus tag
CELE_C56A3.4
See related
AllianceGenome:WB:WBGene00008343
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable ubiquitin-protein transferase activity. Predicted to be located in membrane. Orthologous to human RNF26 (ring finger protein 26). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C56A3.4 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (13550516..13551754, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein;G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene ncRNA Neighboring gene Leucine-rich repeat-containing protein Neighboring gene EF-hand domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RING-type domain-containing protein
NP_001129886.1
  • Confirmed by transcript evidence
NP_506354.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13550516..13551754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001136414.2 → NP_001129886.1  RING-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001129886.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B5U8M8
    Conserved Domains (2) summary
    cd00162
    Location:48 → 87
    RING_Ubox; modified RING-HC finger (C3HC5-type) [structural motif]
    pfam13920
    Location:45 → 92
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  2. NM_073953.7 → NP_506354.2  RING-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506354.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18875
    Conserved Domains (2) summary
    cd00162
    Location:170 → 209
    RING_Ubox; modified RING-HC finger (C3HC5-type) [structural motif]
    pfam13920
    Location:167 → 214
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
Nucleotide Protein
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