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clec-57 C-type LECtin [ Caenorhabditis elegans ]

Gene ID: 179951, updated on 28-Oct-2024

Summary

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Official Symbol
clec-57
Official Full Name
C-type LECtin
Primary source
WormBase:WBGene00008594
Locus tag
CELE_F08H9.6
See related
AllianceGenome:WB:WBGene00008594
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See clec-57 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_003283.11 (14469231..14472448)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene SHSP domain-containing protein Neighboring gene Serpentine Receptor, class Z Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene C-type LECtin Neighboring gene C-type LECtin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
C-type LECtin
NP_506587.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    14469231..14472448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_074186.8 → NP_506587.2  C-type LECtin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506587.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19229
    Conserved Domains (3) summary
    smart00034
    Location:21 → 143
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00042
    Location:275 → 373
    CUB; Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein
    cd00041
    Location:149 → 261
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

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