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nhr-193 Nuclear Hormone Receptor family [ Caenorhabditis elegans ]

Gene ID: 180098, updated on 2-Nov-2024

Summary

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Official Symbol
nhr-193
Official Full Name
Nuclear Hormone Receptor family
Primary source
WormBase:WBGene00010215
Locus tag
CELE_F57G8.6
See related
AllianceGenome:WB:WBGene00010215
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nhr-193 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (16342308..16344401)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene tRNA-Asn Neighboring gene ncRNA Neighboring gene tRNA-Asn Neighboring gene Seven TM Receptor Neighboring gene DUF268 domain-containing protein Neighboring gene Serine/threonine-protein phosphatase 2A regulatory subunit pptr-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The C. elegans GATA transcription factor elt-2 mediates distinct transcriptional responses and opposite infection outcomes towards different Bacillus thuringiensis strains. Zárate-Potes A, et al. PLoS Pathog, 2020 Sep. PMID 32970778, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Nuclear Hormone Receptor family
NP_507131.1
  • Product from WormBase gene class nhr;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    16342308..16344401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_074730.3 → NP_507131.1  Nuclear Hormone Receptor family [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_507131.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EC41
    Conserved Domains (2) summary
    smart00399
    Location:3 → 68
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    pfam00104
    Location:152 → 358
    Hormone_recep; Ligand-binding domain of nuclear hormone receptor
Nucleotide Protein
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