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Y60A3A.19 Protein YIPF [ Caenorhabditis elegans ]

Gene ID: 180305, updated on 2-Nov-2024

Summary

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Official Symbol
Y60A3A.19
Official Full Name
Protein YIPF
Primary source
WormBase:WBGene00013365
Locus tag
CELE_Y60A3A.19
See related
AllianceGenome:WB:WBGene00013365
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network. Orthologous to human YIPF4 (Yip1 domain family member 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y60A3A.19 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (19916555..19920001)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein kinase domain-containing protein Neighboring gene FDX-ACB domain-containing protein;phenylalanine--tRNA ligase Neighboring gene ncRNA Neighboring gene Serine/threonine-protein kinase chk-2 Neighboring gene KA1 domain-containing protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
involved_in vesicle fusion with Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Protein YIPF
NP_001123056.1
  • Confirmed by transcript evidence
NP_001370244.1
  • Confirmed by transcript evidence
NP_507855.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    19916555..19920001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001383502.2 → NP_001370244.1  Protein YIPF [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B1GRN9

  2. NM_075454.8 → NP_507855.2  Protein YIPF [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_507855.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U1Y7, Q9U1Y8
    Conserved Domains (1) summary
    pfam04893
    Location:123 → 198
    Yip1; Yip1 domain

  3. NM_001129584.2 → NP_001123056.1  Protein YIPF [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001123056.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5PEX8
    Conserved Domains (1) summary
    cl21557
    Location:73 → 249
    Yip1; Yip1 domain
Nucleotide Protein
Heading Accession and Version

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