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acs-12 4-coumarate--CoA ligase 1-like [ Caenorhabditis elegans ]

Gene ID: 180375, updated on 2-Nov-2024

Summary

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Official Symbol
acs-12
Official Full Name
4-coumarate--CoA ligase 1-like
Primary source
WormBase:WBGene00009106
Locus tag
CELE_F25C8.4
See related
AllianceGenome:WB:WBGene00009106
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable CoA-ligase activity. Predicted to be located in peroxisome. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See acs-12 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_003283.11 (20904169..20907433)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein unc-80 Neighboring gene ncRNA Neighboring gene Amine oxidase domain-containing protein Neighboring gene pseudo Neighboring gene putative tubulin polyglutamylase ttll-9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans. Zhang Y, et al. BMC Genomics, 2013 Mar 12. PMID 23496871, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables CoA-ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables ligase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
4-coumarate--CoA ligase 1-like
NP_508035.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    20904169..20907433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075634.5 → NP_508035.1  4-coumarate--CoA ligase 1-like [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508035.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XV68
    Conserved Domains (2) summary
    cd05911
    Location:33 → 514
    Firefly_Luc_like; Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)
    PLN02246
    Location:2 → 518
    PLN02246; 4-coumarate--CoA ligase
Nucleotide Protein
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