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trap-2 Translocon-associated protein subunit beta [ Caenorhabditis elegans ]

Gene ID: 180422, updated on 2-Nov-2024

Summary

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Official Symbol
trap-2
Official Full Name
Translocon-associated protein subunit beta
Primary source
WormBase:WBGene00020216
Locus tag
CELE_T04G9.5
See related
AllianceGenome:WB:WBGene00020216
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in endoplasmic reticulum membrane. Is expressed in several structures, including hypodermis; intestine; and pharynx. Orthologous to human SSR2 (signal sequence receptor subunit 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See trap-2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Sequence:
Chromosome: X; NC_003284.9 (767023..768069, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene MAP kinase-activating death domain protein Neighboring gene TRAF3-interacting protein 1 Neighboring gene L-type lectin-like domain-containing protein Neighboring gene DUF148 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RNA-binding protein repertoire of Arabidopsis thaliana. Marondedze C, et al. Sci Rep, 2016 Jul 11. PMID 27405932, Free PMC Article
  2. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
  3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Translocon-associated protein subunit beta
NP_508150.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    767023..768069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075749.8 → NP_508150.1  Translocon-associated protein subunit beta [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508150.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q22169
    Conserved Domains (1) summary
    pfam05753
    Location:6 → 184
    TRAP_beta; Translocon-associated protein beta (TRAPB)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q22169.1

Gene LinkOut

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