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Y102A11A.2 Chromatin-remodeling ATPase INO80 [ Caenorhabditis elegans ]

Gene ID: 180515, updated on 2-Nov-2024

Summary

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Official Symbol
Y102A11A.2
Official Full Name
Chromatin-remodeling ATPase INO80
Primary source
WormBase:WBGene00022412
Locus tag
CELE_Y102A11A.2
See related
AllianceGenome:WB:WBGene00022412
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in several structures, including intestine; nervous system; rectal gland cell; tail; and vulval muscle. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y102A11A.2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
8
Sequence:
Chromosome: X; NC_003284.9 (2026642..2031010)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene HALZ domain-containing protein;Lebercilin domain-containing protein Neighboring gene Protein unc-13 homolog A Neighboring gene MliC domain-containing protein Neighboring gene Endoplasmic reticulum-Golgi intermediate compartment protein 1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
Chromatin-remodeling ATPase INO80
NP_001024950.1
  • Confirmed by transcript evidence
NP_001024951.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    2026642..2031010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001029779.4 → NP_001024950.1  Chromatin-remodeling ATPase INO80 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024950.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95XK1
    Conserved Domains (3) summary
    COG1390
    Location:478 → 570
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    cl21478
    Location:467 → 540
    ATP-synt_B; ATP synthase B/B' CF(0)
    cl23750
    Location:482 → 602
    vATP-synt_E; ATP synthase (E/31 kDa) subunit

  2. NM_001029780.6 → NP_001024951.1  Chromatin-remodeling ATPase INO80 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024951.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L062
    Conserved Domains (3) summary
    COG1390
    Location:478 → 570
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    cl21478
    Location:467 → 540
    ATP-synt_B; ATP synthase B/B' CF(0)
    cl23750
    Location:482 → 602
    vATP-synt_E; ATP synthase (E/31 kDa) subunit
Nucleotide Protein
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