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trpp-12 TRansport Protein Particle [ Caenorhabditis elegans ]

Gene ID: 180546, updated on 2-Nov-2024

Summary

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Official Symbol
trpp-12
Official Full Name
TRansport Protein Particle
Primary source
WormBase:WBGene00016614
Locus tag
CELE_C43H6.1
See related
AllianceGenome:WB:WBGene00016614
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be part of TRAPP complex. Predicted to be active in Golgi apparatus. Orthologous to human TRAPPC12 (trafficking protein particle complex subunit 12). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See trpp-12 in Genome Data Viewer
Location:
chromosome: X
Exon count:
10
Sequence:
Chromosome: X; NC_003284.9 (2409691..2412966)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ANK_REP_REGION domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Helix-loop-helix protein 15 Neighboring gene GLutamate Receptor family (AMPA) Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
TRansport Protein Particle
NP_508439.2
  • Product from WormBase gene class trpp;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    2409691..2412966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076038.5 → NP_508439.2  TRansport Protein Particle [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508439.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5WRR4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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