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igcm-3 Ig-like domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 180569, updated on 2-Nov-2024

Summary

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Official Symbol
igcm-3
Official Full Name
Ig-like domain-containing protein
Primary source
WormBase:WBGene00020160
Locus tag
CELE_T02C5.3
See related
AllianceGenome:WB:WBGene00020160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be active in adherens junction. Is expressed in arcade cell; hypodermis; pharyngeal muscle cell; spermatheca; and vulva. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See igcm-3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
12
Sequence:
Chromosome: X; NC_003284.9 (2698250..2705859, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene MICOS complex subunit MIC60-1 Neighboring gene ncRNA Neighboring gene Membrane-associated protein Neighboring gene TNFR-Cys domain-containing protein Neighboring gene ncRNA Neighboring gene EF-hand domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
  2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Ig-like domain-containing protein
NP_001123175.1
  • Confirmed by transcript evidence
NP_001391189.1
  • Confirmed by transcript evidence
NP_001391195.1
  • Confirmed by transcript evidence
NP_001391196.1
  • Confirmed by transcript evidence
NP_001391197.1
  • Confirmed by transcript evidence
NP_001391198.1
  • Confirmed by transcript evidence
NP_001391199.1
  • Partially confirmed by transcript evidence
NP_001391200.1
  • Partially confirmed by transcript evidence
NP_508479.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    2698250..2705859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001404193.1 → NP_001391189.1  Ig-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QC16

  2. NM_001129703.4 → NP_001123175.1  Ig-like domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001123175.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A7LPD6
    Conserved Domains (3) summary
    smart00410
    Location:280 → 365
    IG_like; Immunoglobulin like
    pfam13927
    Location:186 → 232
    Ig_3; Immunoglobulin domain
    cl11960
    Location:286 → 313
    Ig; Immunoglobulin domain

  3. NM_076078.6 → NP_508479.2  Ig-like domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508479.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22096
    Conserved Domains (3) summary
    smart00410
    Location:280 → 365
    IG_like; Immunoglobulin like
    pfam13927
    Location:186 → 232
    Ig_3; Immunoglobulin domain
    cl11960
    Location:286 → 313
    Ig; Immunoglobulin domain

  4. NM_001404194.1 → NP_001391196.1  Ig-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QB36

  5. NM_001404195.1 → NP_001391198.1  Ig-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QDC4

  6. NM_001404196.1 → NP_001391200.1  Ig-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QBH2

  7. NM_001404197.1 → NP_001391195.1  Ig-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4Q9R2

  8. NM_001404198.1 → NP_001391197.1  Ig-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QFI2

  9. NM_001404199.1 → NP_001391199.1  Ig-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QC26
Nucleotide Protein
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