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marg-1 pharyngeal MARGginal cell marker [ Caenorhabditis elegans ]

Gene ID: 180665, updated on 2-Nov-2024

Summary

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Official Symbol
marg-1
Official Full Name
pharyngeal MARGginal cell marker
Primary source
WormBase:WBGene00018538
Locus tag
CELE_F47B7.7
See related
AllianceGenome:WB:WBGene00018538
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in arcade cell; excretory cell; marginal cell; and pharyngeal epithelial cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See marg-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Sequence:
Chromosome: X; NC_003284.9 (3778056..3781140, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Sulfhydryl oxidase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes. Schrimpf SP, et al. PLoS Biol, 2009 Mar 3. PMID 19260763, Free PMC Article
  2. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
pharyngeal MARGginal cell marker
NP_001257004.1
  • Product from WormBase gene class marg;
    Confirmed by transcript evidence
NP_001257005.1
  • Product from WormBase gene class marg;
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    3778056..3781140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001270075.4 → NP_001257004.1  pharyngeal MARGginal cell marker [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257004.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZY6

  2. NM_001270076.5 → NP_001257005.1  pharyngeal MARGginal cell marker [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257005.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    C6KRG1
Nucleotide Protein
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