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F49E10.2 Carotenoid oxygenase [ Caenorhabditis elegans ]

Gene ID: 180855, updated on 2-Nov-2024

Summary

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Official Symbol
F49E10.2
Official Full Name
Carotenoid oxygenase
Primary source
WormBase:WBGene00018640
Locus tag
CELE_F49E10.2
See related
AllianceGenome:WB:WBGene00018640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable beta-carotene 15,15'-dioxygenase activity and carotenoid dioxygenase activity. Predicted to be involved in carotene catabolic process and retinal metabolic process. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F49E10.2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
12
Sequence:
Chromosome: X; NC_003284.9 (5890380..5894757)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Rab-GAP TBC domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables carotenoid dioxygenase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carotene catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retinal metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Carotenoid oxygenase
NP_508986.1
  • Confirmed by transcript evidence
NP_508987.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    5890380..5894757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076585.4 → NP_508986.1  Carotenoid oxygenase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508986.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L060
    Conserved Domains (1) summary
    cl10080
    Location:46 → 546
    RPE65; Retinal pigment epithelial membrane protein

  2. NM_076586.5 → NP_508987.1  Carotenoid oxygenase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508987.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20599
    Conserved Domains (1) summary
    cl10080
    Location:46 → 546
    RPE65; Retinal pigment epithelial membrane protein
Nucleotide Protein
Heading Accession and Version

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