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col-172 Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 180934, updated on 2-Nov-2024

Summary

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Official Symbol
col-172
Official Full Name
Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
Primary source
WormBase:WBGene00000745
Locus tag
CELE_F38B6.5
See related
AllianceGenome:WB:WBGene00000745
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-172 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Sequence:
Chromosome: X; NC_003284.9 (6672819..6674423)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene NR LBD domain-containing protein;Nuclear receptor Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Phosphoribosylglycinamide formyltransferase Neighboring gene PMD domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The adhesion GPCR and PCP component flamingo (FMI-1) alters body size and regulates the composition of the extracellular matrix. Schön JL, et al. Matrix Biol, 2024 Apr. PMID 38378098
  2. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
NP_001024635.1
  • Confirmed by transcript evidence
NP_001379836.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    6672819..6674423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001029464.4 → NP_001024635.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024635.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20142
    Conserved Domains (2) summary
    pfam01391
    Location:203 → 258
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:19 → 69
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain

  2. NM_001392792.1 → NP_001379836.1  Collagen triple helix repeat protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7YZV5
    Conserved Domains (1) summary
    pfam01391
    Location:48 → 94
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
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