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F41B4.3 Proteobacterial sortase system OmpA family protein [ Caenorhabditis elegans ]

Gene ID: 180954, updated on 2-Nov-2024

Summary

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Official Symbol
F41B4.3
Official Full Name
Proteobacterial sortase system OmpA family protein
Primary source
WormBase:WBGene00018259
Locus tag
CELE_F41B4.3
See related
AllianceGenome:WB:WBGene00018259
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in endoplasmic reticulum unfolded protein response. Acts upstream of or within IRE1-mediated unfolded protein response. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F41B4.3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Sequence:
Chromosome: X; NC_003284.9 (6835491..6836115, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ZM domain-containing protein Neighboring gene Secreted protein Neighboring gene Glutamate receptor ionotropic, kainate 2;Ionotropic glutamate receptor C-terminal domain-containing protein Neighboring gene putative ATP synthase subunit g 2, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A survival pathway for Caenorhabditis elegans with a blocked unfolded protein response. Urano F, et al. J Cell Biol, 2002 Aug 19. PMID 12186849, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
acts_upstream_of_or_within IRE1-mediated unfolded protein response HEP PubMed 
involved_in endoplasmic reticulum unfolded protein response HEP PubMed 

General protein information

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Preferred Names
Proteobacterial sortase system OmpA family protein
NP_509150.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    6835491..6836115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076749.7 → NP_509150.1  Proteobacterial sortase system OmpA family protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509150.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q966J4
Nucleotide Protein
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