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chts-1 EGF-like domain-containing protein;Peritrophic membrane chitin binding protein [ Caenorhabditis elegans ]

Gene ID: 181010, updated on 2-Nov-2024

Summary

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Official Symbol
chts-1
Official Full Name
EGF-like domain-containing protein;Peritrophic membrane chitin binding protein
Primary source
WormBase:WBGene00018607
Locus tag
CELE_F48E3.8
See related
AllianceGenome:WB:WBGene00018607
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in carbohydrate metabolic process. Located in endoplasmic reticulum. Is expressed in AIYL; AIYR; and somatic cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See chts-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
44
Sequence:
Chromosome: X; NC_003284.9 (7507877..7519669, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Neur_chan_LBD domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Ala Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pharyngeal polysaccharide deacetylases affect development in the nematode C. elegans and deacetylate chitin in vitro. Heustis RJ, et al. PLoS One, 2012. PMID 22808160, Free PMC Article
  2. A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins. Kamal M, et al. Elife, 2022 Oct 19. PMID 36259463, Free PMC Article
  3. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
  4. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
EGF-like domain-containing protein;Peritrophic membrane chitin binding protein
NP_001360043.1
  • Partially confirmed by transcript evidence
NP_001360044.1
  • Partially confirmed by transcript evidence
NP_001360643.1
  • Partially confirmed by transcript evidence
NP_001360754.1
  • Partially confirmed by transcript evidence
NP_001360755.1
  • Partially confirmed by transcript evidence
NP_001360756.1
  • Partially confirmed by transcript evidence
NP_001391187.1
  • Confirmed by transcript evidence
NP_001391188.1
  • Confirmed by transcript evidence
NP_741841.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    7507877..7519669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001373364.2 → NP_001360043.1  EGF-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8WFH5
    Conserved Domains (2) summary
    pfam01683
    Location:300 → 351
    EB; EB module
    cl15692
    Location:1282 → 1544
    CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

  2. NM_001373362.3 → NP_001360044.1  EGF-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L041
    Conserved Domains (2) summary
    pfam01683
    Location:300 → 351
    EB; EB module
    cl15692
    Location:1241 → 1503
    CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

  3. NM_001373361.3 → NP_001360755.1  EGF-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0INQ1
    Conserved Domains (2) summary
    pfam01683
    Location:300 → 351
    EB; EB module
    cl15692
    Location:963 → 1225
    CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

  4. NM_001373360.2 → NP_001360643.1  EGF-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0IK15
    Conserved Domains (2) summary
    pfam01683
    Location:476 → 527
    EB; EB module
    cl15692
    Location:1458 → 1720
    CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

  5. NM_001404202.1 → NP_001391188.1  EGF-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QDB1

  6. NM_001404203.1 → NP_001391187.1  EGF-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QFG5

  7. NM_001373363.2 → NP_001360754.1  EGF-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0IKX4
    Conserved Domains (2) summary
    pfam01683
    Location:300 → 351
    EB; EB module
    cl15692
    Location:1004 → 1266
    CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

  8. NM_171729.8 → NP_741841.2  Peritrophic membrane chitin binding protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741841.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L042
    Conserved Domains (1) summary
    cl15692
    Location:55 → 317
    CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

  9. NM_001373365.4 → NP_001360756.1  EGF-like domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4V0INH8
    Conserved Domains (1) summary
    pfam01683
    Location:300 → 351
    EB; EB module
Nucleotide Protein
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