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sto-1 Band 7 domain-containing protein;Stomatin-1 [ Caenorhabditis elegans ]

Gene ID: 181017, updated on 2-Nov-2024

Summary

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Official Symbol
sto-1
Official Full Name
Band 7 domain-containing protein;Stomatin-1
Primary source
WormBase:WBGene00006063
Locus tag
CELE_F08C6.4
See related
AllianceGenome:WB:WBGene00006063
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in nervous system and pharynx. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sto-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
7
Sequence:
Chromosome: X; NC_003284.9 (7562824..7564814)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Cation efflux protein cytoplasmic domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Vacuolar protein sorting-associated protein 52 homolog Neighboring gene Apyrase apy-1 Neighboring gene Zinc finger protein unc-98 Neighboring gene Putative choline-phosphate cytidylyltransferase;choline-phosphate cytidylyltransferase Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional genomics of the cilium, a sensory organelle. Blacque OE, et al. Curr Biol, 2005 May 24. PMID 15916950
  2. The relationship between intraflagellar transport and upstream protein trafficking pathways and macrocyclic lactone resistance in Caenorhabditis elegans. Brinzer RA, et al. G3 (Bethesda), 2024 Mar 6. PMID 38227795, Free PMC Article
  3. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  4. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
  5. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Band 7 domain-containing protein;Stomatin-1
NP_001123124.1
  • Confirmed by transcript evidence
NP_509281.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    7562824..7564814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076880.8 → NP_509281.1  Stomatin-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509281.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q19200
    Conserved Domains (2) summary
    smart00244
    Location:62 → 220
    PHB; prohibitin homologues
    cl19107
    Location:86 → 283
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

  2. NM_001129652.6 → NP_001123124.1  Band 7 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001123124.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G8JY63
    Conserved Domains (1) summary
    cl19107
    Location:86 → 283
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q19200.2

Gene LinkOut

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