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C39D10.7 Chitin-binding type-2 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181050, updated on 2-Nov-2024

Summary

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Official Symbol
C39D10.7
Official Full Name
Chitin-binding type-2 domain-containing protein
Primary source
WormBase:WBGene00016534
Locus tag
CELE_C39D10.7
See related
AllianceGenome:WB:WBGene00016534
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable chitin binding activity. Predicted to be located in extracellular region. Is expressed in germ line. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C39D10.7 in Genome Data Viewer
Location:
chromosome: X
Exon count:
14
Sequence:
Chromosome: X; NC_003284.9 (7907966..7913930, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tRNA-Glu Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Zwei Ig domain protein zig-4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. KIN-4/MAST kinase promotes PTEN-mediated longevity of Caenorhabditis elegans via binding through a PDZ domain. An SWA, et al. Aging Cell, 2019 Jun. PMID 30773781, Free PMC Article
  2. Galectin LEC-1 plays a defensive role against damage due to oxidative stress in Caenorhabditis elegans. Takeuchi T, et al. J Biochem, 2013 Nov. PMID 23935187
  3. Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network. Tewari M, et al. Mol Cell, 2004 Feb 27. PMID 14992718
  4. The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification. Zhang C, et al. Curr Biol, 2012 May 22. PMID 22542102, Free PMC Article
  5. Protein interaction mapping in C. elegans using proteins involved in vulval development. Walhout AJ, et al. Science, 2000 Jan 7. PMID 10615043

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Chitin-binding type-2 domain-containing protein
NP_509334.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    7907966..7913930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076933.10 → NP_509334.3  Chitin-binding type-2 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509334.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18529
    Conserved Domains (2) summary
    smart00494
    Location:337 → 384
    ChtBD2; Chitin-binding domain type 2
    pfam01607
    Location:560 → 612
    CBM_14; Chitin binding Peritrophin-A domain
Nucleotide Protein
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