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nra-3 AT rich interactive domain 1A (SWI-like);PHD-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181206, updated on 2-Nov-2024

Summary

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Official Symbol
nra-3
Official Full Name
AT rich interactive domain 1A (SWI-like);PHD-type domain-containing protein
Primary source
WormBase:WBGene00007651
Locus tag
CELE_C17G1.4
See related
AllianceGenome:WB:WBGene00007651
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nra-3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Sequence:
Chromosome: X; NC_003284.9 (9925728..9931462, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene UDP-glucuronosyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The TORC1 phosphoproteome in C. elegans reveals roles in transcription and autophagy. Sewell AK, et al. iScience, 2022 May 20. PMID 35479415, Free PMC Article
  2. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article
  3. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
  4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
AT rich interactive domain 1A (SWI-like);PHD-type domain-containing protein
NP_001359582.1
  • Confirmed by transcript evidence
NP_001359683.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    9925728..9931462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001373452.1 → NP_001359582.1  PHD-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q93238
    Conserved Domains (4) summary
    PTZ00449
    Location:454 → 753
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd15489
    Location:901 → 954
    PHD_SF; PHD finger superfamily
    pfam06682
    Location:275 → 414
    SARAF; SOCE-associated regulatory factor of calcium homoeostasis
    pfam09770
    Location:103 → 224
    PAT1; Topoisomerase II-associated protein PAT1

  2. NM_001373453.3 → NP_001359683.1  AT rich interactive domain 1A (SWI-like) [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5WRN0
    Conserved Domains (3) summary
    PTZ00449
    Location:454 → 753
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam06682
    Location:275 → 414
    SARAF; SOCE-associated regulatory factor of calcium homoeostasis
    pfam09770
    Location:103 → 224
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
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