U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

vap-2 SCP domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181273, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
vap-2
Official Full Name
SCP domain-containing protein
Primary source
WormBase:WBGene00011462
Locus tag
CELE_T05A10.5
See related
AllianceGenome:WB:WBGene00011462
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See vap-2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
12
Sequence:
Chromosome: X; NC_003284.9 (10789611..10792535, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Transcription factor sma-9 Neighboring gene CLaudin-like in Caenorhabditis Neighboring gene Transthyretin-like family protein Neighboring gene DUF19 domain-containing protein Neighboring gene ncRNA Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1;Phosphoinositide phospholipase C

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The barber's pole worm CAP protein superfamily--A basis for fundamental discovery and biotechnology advances. Mohandas N, et al. Biotechnol Adv, 2015 Dec. PMID 26239368
  2. CAP protein superfamily members in Toxocara canis. Stroehlein AJ, et al. Parasit Vectors, 2016 Jun 24. PMID 27342979, Free PMC Article
  3. Distinct patterns of gene and protein expression elicited by organophosphorus pesticides in Caenorhabditis elegans. Lewis JA, et al. BMC Genomics, 2009 Apr 29. PMID 19402892, Free PMC Article
  4. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SCP domain-containing protein
NP_001300377.1
  • Partially confirmed by transcript evidence
NP_001300378.1
  • Confirmed by transcript evidence
NP_509802.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    10789611..10792535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077401.7 → NP_509802.2  SCP domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509802.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7VCA9, P90958
    Conserved Domains (1) summary
    smart00198
    Location:281 → 434
    SCP; SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

  2. NM_001313448.4 → NP_001300377.1  SCP domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AST9, B7VCA9
    Conserved Domains (1) summary
    smart00198
    Location:315 → 468
    SCP; SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

  3. NM_001313449.4 → NP_001300378.1  SCP domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AWG2
    Conserved Domains (2) summary
    smart00198
    Location:185 → 338
    SCP; SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains
    cl00133
    Location:2 → 123
    SCP; SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous