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F52D10.2 PID domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181347, updated on 2-Nov-2024

Summary

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Official Symbol
F52D10.2
Official Full Name
PID domain-containing protein
Primary source
WormBase:WBGene00009930
Locus tag
CELE_F52D10.2
See related
AllianceGenome:WB:WBGene00009930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in several structures, including intestinal muscle; pharyngeal-intestinal valve; pharynx; reproductive system; and tail. Orthologous to several human genes including FAM43B (family with sequence similarity 43 member B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F52D10.2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Sequence:
Chromosome: X; NC_003284.9 (11589686..11591720, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene FERM domain-containing protein;FYVE, RhoGEF and PH domain-containing protein 6;Moesin/ezrin/radixin homolog 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Bicarbonate transporter-like transmembrane domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
  2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
  3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
PID domain-containing protein
NP_509937.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    11589686..11591720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077536.6 → NP_509937.1  PID domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509937.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20652
    Conserved Domains (1) summary
    pfam14719
    Location:34 → 208
    PID_2; Phosphotyrosine interaction domain (PTB/PID)
Nucleotide Protein
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