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egrh-1 Early growth response factor homolog 1 [ Caenorhabditis elegans ]

Gene ID: 181580, updated on 2-Nov-2024

Summary

Official Symbol
egrh-1
Official Full Name
Early growth response factor homolog 1
Primary source
WormBase:WBGene00007772
Locus tag
CELE_C27C12.2
See related
AllianceGenome:WB:WBGene00007772
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of oocyte maturation and negative regulation of ovulation. Located in nucleus and perinuclear region of cytoplasm. Is expressed in several structures, including body wall musculature; hermaphrodite somatic gonadal cell; intestine; pharynx; and sperm. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1D; Charcot-Marie-Tooth disease type 3; Charcot-Marie-Tooth disease type 4E; asthma; and motor peripheral neuropathy. Orthologous to several human genes including EGR1 (early growth response 1) and EGR3 (early growth response 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See egrh-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Sequence:
Chromosome: X; NC_003284.9 (14845937..14849217)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Dipeptidyl peptidase family member 2 Neighboring gene DEgenerin Like Neighboring gene E3 ubiquitin-protein ligase LIN-1 Neighboring gene UNC93-like protein MFSD11

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in negative regulation of oocyte maturation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of ovulation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Early growth response factor homolog 1
NP_510462.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    14845937..14849217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_078061.6NP_510462.2  Early growth response factor homolog 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_510462.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q18250
    Conserved Domains (3) summary
    sd00017
    Location:376398
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:374398
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:418443
    zf-H2C2_2; Zinc-finger double domain