U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

col-41 Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181610, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
col-41
Official Full Name
Nematode cuticle collagen N-terminal domain-containing protein
Primary source
WormBase:WBGene00000618
Locus tag
CELE_T10B10.1
See related
AllianceGenome:WB:WBGene00000618
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is expressed in hypodermis and vulval precursor cell. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See col-41 in Genome Data Viewer
Location:
chromosome: X
Exon count:
2
Sequence:
Chromosome: X; NC_003284.9 (15175032..15176481, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase Neighboring gene Secreted protein Neighboring gene Ion transport domain-containing protein Neighboring gene Peptidase M16 N-terminal domain-containing protein Neighboring gene PH domain-containing protein;RUN domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Multiple cis elements and GATA factors regulate a cuticle collagen gene in Caenorhabditis elegans. Yin J, et al. Genesis, 2015 Mar-Apr. PMID 25711168, Free PMC Article
  2. BMP Signaling Determines Body Size via Transcriptional Regulation of Collagen Genes in Caenorhabditis elegans. Madaan U, et al. Genetics, 2018 Dec. PMID 30274988, Free PMC Article
  3. The adhesion GPCR and PCP component flamingo (FMI-1) alters body size and regulates the composition of the extracellular matrix. Schön JL, et al. Matrix Biol, 2024 Apr. PMID 38378098
  4. Loss of an H3K9me anchor rescues laminopathy-linked changes in nuclear organization and muscle function in an Emery-Dreifuss muscular dystrophy model. Harr JC, et al. Genes Dev, 2020 Apr 1. PMID 32139421, Free PMC Article
  5. Ketamine induces apical extracellular matrix modifications in Caenorhabditis elegans. Yücel D. Sci Rep, 2022 Dec 21. PMID 36543791, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Nematode cuticle collagen N-terminal domain-containing protein
NP_510522.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    15175032..15176481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_078121.5 → NP_510522.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_510522.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22369
    Conserved Domains (3) summary
    pfam01391
    Location:208 → 267
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:3 → 55
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    PRK07764
    Location:153 → 362
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools