eat-20 Abnormal pharyngeal pumping eat-20 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: eat-20
Official Full Name: Abnormal pharyngeal pumping eat-20
Primary source: WormBase:WBGene00001148
Locus tag: CELE_H30A04.1
See related: AllianceGenome:WB:WBGene00001148
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable calcium ion binding activity. Located in axon and cell surface. Is expressed in several structures, including ALN; anterior ganglion (post); pharynx; ray neurons; and somatic nervous system. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See eat-20 in Genome Data Viewer

Location:: chromosome: X

Exon count:: 14

Sequence:: Chromosome: X; NC_003284.9 (15516653..15524030)

Chromosome X - NC_003284.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

H30A04.1 (e-PCR)
- UniSTS:307005

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in axon	IDA Inferred from Direct Assay more info	PubMed
located_in cell surface	IDA Inferred from Direct Assay more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Abnormal pharyngeal pumping eat-20

NP_001024741.1

Confirmed by transcript evidence

NP_001369791.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003284.9 Reference assembly

Range

15516653..15524030

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001029570.6 → NP_001024741.1 Abnormal pharyngeal pumping eat-20 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001024741.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9NL29, Q9XXU1

Conserved Domains (1) summary

cd00054
Location:224 → 257

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
NM_001383685.2 → NP_001369791.1 Abnormal pharyngeal pumping eat-20 [Caenorhabditis elegans]

Status: REVIEWED

Conserved Domains (1) summary

cd00054
Location:224 → 257

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...