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pat-9 C2H2-type domain-containing protein;Zinc finger protein pat-9 [ Caenorhabditis elegans ]

Gene ID: 181714, updated on 2-Nov-2024

Summary

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Official Symbol
pat-9
Official Full Name
C2H2-type domain-containing protein;Zinc finger protein pat-9
Primary source
WormBase:WBGene00003933
Locus tag
CELE_T27B1.2
See related
AllianceGenome:WB:WBGene00003933
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable chromatin insulator sequence binding activity. Involved in regulation of striated muscle cell differentiation. Located in nucleus. Is expressed in body wall musculature and gonad. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pat-9 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Sequence:
Chromosome: X; NC_003284.9 (16536890..16540213)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Intraflagellar transport protein osm-1 Neighboring gene F-box domain-containing protein Neighboring gene tRNA-Phe Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C. elegans PAT-9 is a nuclear zinc finger protein critical for the assembly of muscle attachments. Liu Q, et al. Cell Biosci, 2012 May 22. PMID 22616817, Free PMC Article
  2. Genes critical for muscle development and function in Caenorhabditis elegans identified through lethal mutations. Williams BD, et al. J Cell Biol, 1994 Feb. PMID 8106547, Free PMC Article
  3. Sarcomere assembly in C. elegans muscle. Moerman DG, et al. WormBook, 2006 Jan 16. PMID 18050483, Free PMC Article
  4. Molecular structure of sarcomere-to-membrane attachment at M-Lines in C. elegans muscle. Qadota H, et al. J Biomed Biotechnol, 2010. PMID 20414365, Free PMC Article
  5. An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. Meissner B, et al. PLoS Genet, 2009 Jun. PMID 19557190, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables chromatin insulator sequence binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of striated muscle cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in chromosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C2H2-type domain-containing protein;Zinc finger protein pat-9
NP_001382748.1
  • Confirmed by transcript evidence
NP_001382749.1
  • Confirmed by transcript evidence
NP_001382750.1
  • Confirmed by transcript evidence
NP_510680.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    16536890..16540213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_078279.7 → NP_510680.2  Zinc finger protein pat-9 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_510680.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q22829
    Conserved Domains (2) summary
    sd00017
    Location:86 → 106
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:98 → 123
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001395794.1 → NP_001382748.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8D9I7Y6
    Conserved Domains (1) summary
    sd00017
    Location:86 → 106
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. NM_001395795.1 → NP_001382749.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8D9MJX7
    Conserved Domains (1) summary
    sd00017
    Location:54 → 74
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. NM_001395796.1 → NP_001382750.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8D9MHV7
    Conserved Domains (1) summary
    sd00017
    Location:54 → 74
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q22829.2

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