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rabr-2 Ras-related protein Rab-44 [ Caenorhabditis elegans ]

Gene ID: 181797, updated on 2-Nov-2024

Summary

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Official Symbol
rabr-2
Official Full Name
Ras-related protein Rab-44
Primary source
WormBase:WBGene00007067
Locus tag
CELE_4R79.2
See related
AllianceGenome:WB:WBGene00007067
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in vesicle-mediated transport. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rabr-2 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
10
Sequence:
Chromosome: IV; NC_003282.8 (17480298..17483330, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Putative glucosylceramidase 3 Neighboring gene ncRNA Neighboring gene Ground-like domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Metalloendopeptidase;Zinc metalloproteinase nas-6 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Ras-related protein Rab-44
NP_001255966.1
  • Confirmed by transcript evidence
NP_001255967.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    17480298..17483330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269037.2 → NP_001255966.1  Ras-related protein Rab-44 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001255966.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    I7EVL8, Q9XXA4
    Conserved Domains (2) summary
    smart00175
    Location:203 → 370
    RAB; Rab subfamily of small GTPases
    cd00154
    Location:203 → 365
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

  2. NM_001269038.1 → NP_001255967.1  Ras-related protein Rab-44 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001255967.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    D3NQA2
    Conserved Domains (2) summary
    smart00175
    Location:119 → 286
    RAB; Rab subfamily of small GTPases
    cd00154
    Location:119 → 281
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
Nucleotide Protein
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