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B0393.7 EGF-like domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181958, updated on 2-Nov-2024

Summary

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Official Symbol
B0393.7
Official Full Name
EGF-like domain-containing protein
Primary source
WormBase:WBGene00007172
Locus tag
CELE_B0393.7
See related
AllianceGenome:WB:WBGene00007172
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See B0393.7 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (4776038..4778103, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Nidogen Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CUB domain-containing protein;Insulin/EGF-Receptor L Domain protein Neighboring gene RING-type domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
EGF-like domain-containing protein
NP_497983.4
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    4776038..4778103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065582.8 → NP_497983.4  EGF-like domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497983.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q17496
    Conserved Domains (1) summary
    cd00112
    Location:186 → 220
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
Nucleotide Protein
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