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C08A9.3 SID1 transmembrane family member 1 [ Caenorhabditis elegans ]

Gene ID: 182383, updated on 2-Nov-2024

Summary

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Official Symbol
C08A9.3
Official Full Name
SID1 transmembrane family member 1
Primary source
WormBase:WBGene00015583
Locus tag
CELE_C08A9.3
See related
AllianceGenome:WB:WBGene00015583
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA transmembrane transporter activity and double-stranded RNA binding activity. Predicted to be involved in RNA transport. Predicted to be located in membrane. Predicted to be active in lysosome and plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C08A9.3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
17
Sequence:
Chromosome: X; NC_003284.9 (17087882..17093299, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Superoxide dismutase [Mn] 2, mitochondrial Neighboring gene Myb_DNA-bind_3 domain-containing protein Neighboring gene Myb_DNA-bind_3 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables double-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in RNA transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in lysosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SID1 transmembrane family member 1
NP_001257283.1
  • Partially confirmed by transcript evidence
NP_001257284.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    17087882..17093299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001270354.2 → NP_001257283.1  SID1 transmembrane family member 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257283.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    D1MN44
    Conserved Domains (1) summary
    pfam13965
    Location:115 → 694
    SID-1_RNA_chan; dsRNA-gated channel SID-1

  2. NM_001270355.1 → NP_001257284.1  SID1 transmembrane family member 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257284.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYK1
    Conserved Domains (1) summary
    pfam13965
    Location:160 → 739
    SID-1_RNA_chan; dsRNA-gated channel SID-1
Nucleotide Protein
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