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nhr-154 Nuclear hormone receptor family member nhr-154 [ Caenorhabditis elegans ]

Gene ID: 182565, updated on 2-Nov-2024

Summary

Official Symbol
nhr-154
Official Full Name
Nuclear hormone receptor family member nhr-154
Primary source
WormBase:WBGene00007547
Locus tag
CELE_C13C4.2
See related
AllianceGenome:WB:WBGene00007547
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in response to starvation. Predicted to be located in nucleus. Is expressed in alimentary muscle; head neurons; intestine; pharynx; and rectal valve cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See nhr-154 in Genome Data Viewer
Location:
chromosome: V
Exon count:
9
Sequence:
Chromosome: V; NC_003283.11 (12101293..12103396)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nuclear receptor Neighboring gene Nuclear hormone receptor family member nhr-209 Neighboring gene ncRNA Neighboring gene Nuclear hormone receptor family member nhr-153 Neighboring gene Nuclear hormone receptor family member nhr-136;Nuclear receptor domain-containing protein Neighboring gene Phospholysine phosphohistidine inorganic pyrophosphate phosphatase

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclear receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in intracellular receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in response to starvation IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Nuclear hormone receptor family member nhr-154
NP_506037.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    12101293..12103396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073636.5NP_506037.2  Nuclear hormone receptor family member nhr-154 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506037.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O01931, O02284
    Conserved Domains (2) summary
    cd06960
    Location:83160
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:266429
    HOLI; Ligand binding domain of hormone receptors