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C16E9.1 VWFA domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 182693, updated on 2-Nov-2024

Summary

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Official Symbol
C16E9.1
Official Full Name
VWFA domain-containing protein
Primary source
WormBase:WBGene00015865
Locus tag
CELE_C16E9.1
See related
AllianceGenome:WB:WBGene00015865
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in collagen-containing extracellular matrix. Orthologous to human MATN1 (matrilin 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C16E9.1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
11
Sequence:
Chromosome: X; NC_003284.9 (6940217..6943722)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene DUF2045 domain containing protein;Transposase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Innexin Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The in-silico characterization of the Caenorhabditis elegans matrisome and proposal of a novel collagen classification. Teuscher AC, et al. Matrix Biol Plus, 2019 Feb. PMID 33543001, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables extracellular matrix structural constituent RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
VWFA domain-containing protein
NP_509176.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    6940217..6943722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076775.6 → NP_509176.2  VWFA domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509176.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18048
    Conserved Domains (2) summary
    cd01476
    Location:158 → 315
    VWA_integrin_invertebrates; VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins ...
    pfam00092
    Location:391 → 555
    VWA; von Willebrand factor type A domain
Nucleotide Protein
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Gene LinkOut

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