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vep-2 Variable Ectoderm Patterning [ Caenorhabditis elegans ]

Gene ID: 182765, updated on 2-Nov-2024

Summary

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Official Symbol
vep-2
Official Full Name
Variable Ectoderm Patterning
Primary source
WormBase:WBGene00015952
Locus tag
CELE_C18B2.1
See related
AllianceGenome:WB:WBGene00015952
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable chondroitin 4-sulfotransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process and positive regulation of response to oxidative stress. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See vep-2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
7
Sequence:
Chromosome: X; NC_003284.9 (3628316..3630884)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene DEgenerin Like Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene Glutathione S-Transferase Neighboring gene C2 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Increasing Complexity of the N-Glycome During Caenorhabditis Development. Wilson IBH, et al. Mol Cell Proteomics, 2023 Mar. PMID 36717059, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables chondroitin 4-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of response to oxidative stress IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Variable Ectoderm Patterning
NP_508624.1
  • Partially confirmed by transcript evidence;
    Product from WormBase gene class vep

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    3628316..3630884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076223.1 → NP_508624.1  Variable Ectoderm Patterning [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508624.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q18079
    Conserved Domains (1) summary
    pfam03567
    Location:103 → 317
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q18079.1

Gene LinkOut

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