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C28H8.5 ShKT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 182996, updated on 2-Nov-2024

Summary

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Official Symbol
C28H8.5
Official Full Name
ShKT domain-containing protein
Primary source
WormBase:WBGene00016196
Locus tag
CELE_C28H8.5
See related
AllianceGenome:WB:WBGene00016196
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Orthologous to human THAP4 (THAP domain containing 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C28H8.5 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (5884307..5885852)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene COX assembly mitochondrial protein Neighboring gene SAC3/GANP/THP3 conserved domain-containing protein;SAC3_GANP domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Paxillin homolog 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ShKT domain-containing protein
NP_001040848.1
  • Partially confirmed by transcript evidence
NP_001040849.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    5884307..5885852
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047383.3 → NP_001040848.1  ShKT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040848.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q09244
    Conserved Domains (2) summary
    smart00254
    Location:80 → 115
    ShKT; ShK toxin domain
    cd07828
    Location:132 → 300
    lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins

  2. NM_001047384.2 → NP_001040849.1  ShKT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040849.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q27GU9
    Conserved Domains (2) summary
    smart00254
    Location:32 → 67
    ShKT; ShK toxin domain
    cd07828
    Location:84 → 252
    lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q09244.1

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