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heri-1 Chromo domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 183036, updated on 2-Nov-2024

Summary

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Official Symbol
heri-1
Official Full Name
Chromo domain-containing protein
Primary source
WormBase:WBGene00016236
Locus tag
CELE_C29H12.5
See related
AllianceGenome:WB:WBGene00016236
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to be active in cytoplasm. Is expressed in several structures, including Psub1; Psub2; Psub3; Psub4; and Z2. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See heri-1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
10
Sequence:
Chromosome: II; NC_003280.10 (6110448..6113194, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Retinoblastoma-binding protein homolog 5 Neighboring gene ncRNA Neighboring gene RGS domain-containing protein;Regulator of G-protein signaling rgs-3 Neighboring gene Uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transgenerational Epigenetic Inheritance Is Negatively Regulated by the HERI-1 Chromodomain Protein. Perales R, et al. Genetics, 2018 Dec. PMID 30389807, Free PMC Article
  2. Genomic overview of protein kinases. Manning G. WormBook, 2005 Dec 13. PMID 18050405, Free PMC Article
  3. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Chromo domain-containing protein
NP_495224.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    6110448..6113194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062823.4 → NP_495224.2  Chromo domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18313
    Conserved Domains (2) summary
    smart00298
    Location:8 → 92
    CHROMO; Chromatin organization modifier domain
    cd00180
    Location:208 → 345
    PKc; Catalytic domain of Protein Kinases
Nucleotide Protein
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