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mutd-1 Biogenesis of lysosome-related organelles complex 1 subunit 5 [ Caenorhabditis elegans ]

Gene ID: 183210, updated on 2-Nov-2024

Summary

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Official Symbol
mutd-1
Official Full Name
Biogenesis of lysosome-related organelles complex 1 subunit 5
Primary source
WormBase:WBGene00016404
Locus tag
CELE_C34D4.13
See related
AllianceGenome:WB:WBGene00016404
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in endosomal transport. Predicted to be located in transport vesicle. Predicted to be part of BLOC-1 complex. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See mutd-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (7133448..7134083, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Glycine Rich Secreted Protein Neighboring gene Peptidyl-prolyl cis-trans isomerase Neighboring gene E3 ubiquitin-protein ligase;E3 ubiquitin-protein ligase hecd-1 Neighboring gene putative Golgi apparatus membrane protein-like protein C34D4.4 Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C. elegans BLOC-1 functions in trafficking to lysosome-related gut granules. Hermann GJ, et al. PLoS One, 2012. PMID 22916203, Free PMC Article
  2. Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states. Tan D, et al. Elife, 2016 Mar 8. PMID 26952210, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in endosomal transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of BLOC-1 complex IEA
Inferred from Electronic Annotation
more info
  
part_of BLOC-1 complex TAS
Traceable Author Statement
more info
 PubMed 
located_in transport vesicle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Biogenesis of lysosome-related organelles complex 1 subunit 5
NP_501119.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    7133448..7134083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068718.3 → NP_501119.2  Biogenesis of lysosome-related organelles complex 1 subunit 5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501119.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q18446
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q18446.2

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