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ilys-1 lysozyme [ Caenorhabditis elegans ]

Gene ID: 183474, updated on 2-Nov-2024

Summary

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Official Symbol
ilys-1
Official Full Name
lysozyme
Primary source
WormBase:WBGene00016668
Locus tag
CELE_C45G7.1
See related
AllianceGenome:WB:WBGene00016668
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable lysozyme activity. Predicted to be involved in defense response to Gram-positive bacterium. Is expressed in intestine; mc1; mc2; pm3; and pm4. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ilys-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (2470414..2471449)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Invertebrate-type lysozyme 3 Neighboring gene Invertebrate-type lysozyme 2 Neighboring gene Ground-like domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Phospholipase A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diversification and adaptive sequence evolution of Caenorhabditis lysozymes (Nematoda: Rhabditidae). Schulenburg H, et al. BMC Evol Biol, 2008 Apr 19. PMID 18423043, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables lysozyme activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables lysozyme activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in defense response to Gram-positive bacterium IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
  
involved_in killing of cells of another organism IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lysozyme
NP_500208.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    2470414..2471449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067807.3 → NP_500208.2  lysozyme [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500208.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O76359
    Conserved Domains (1) summary
    pfam05497
    Location:21 → 68
    Destabilase; Destabilase
Nucleotide Protein
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