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txt-1 PDZ domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 183651, updated on 2-Nov-2024

Summary

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Official Symbol
txt-1
Official Full Name
PDZ domain-containing protein
Primary source
WormBase:WBGene00016807
Locus tag
CELE_C50D2.3
See related
AllianceGenome:WB:WBGene00016807
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in chromatin. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See txt-1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
4
Sequence:
Chromosome: II; NC_003280.10 (106189..107485)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Cationic amino acid transporter C-terminal domain-containing protein Neighboring gene Ntox44 domain-containing protein;Peptidase S1 domain-containing protein Neighboring gene Protein melted homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcellular chaperone signaling is an intercellular stress-response distinct from the HSF-1-mediated heat shock response. Miles J, et al. PLoS Biol, 2023 Feb. PMID 36780563, Free PMC Article
  2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
PDZ domain-containing protein
NP_493661.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    106189..107485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_061260.3 → NP_493661.1  PDZ domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493661.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44797
    Conserved Domains (1) summary
    cd00992
    Location:45 → 100
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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