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luc-7L3 Luc7-like protein 3 [ Caenorhabditis elegans ]

Gene ID: 183652, updated on 2-Nov-2024

Summary

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Official Symbol
luc-7L3
Official Full Name
Luc7-like protein 3
Primary source
WormBase:WBGene00016811
Locus tag
CELE_C50D2.8
See related
AllianceGenome:WB:WBGene00016811
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site recognition. Predicted to be part of U1 snRNP. Orthologous to human LUC7L3 (LUC7 like 3 pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See luc-7L3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
7
Sequence:
Chromosome: II; NC_003280.10 (95669..97944, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Malonyl-CoA:ACP transacylase (MAT) domain-containing protein Neighboring gene putative ADP-dependent glucokinase Neighboring gene Splicing factor 3B subunit 6-like protein Neighboring gene Transcriptional regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure activity relationship and target prediction for ABX464 analogues in Caenorhabditis elegans. Shanley HT, et al. Bioorg Med Chem, 2024 Jan 15. PMID 38134663
  2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Luc7-like protein 3
NP_001367546.1
  • Confirmed by transcript evidence
NP_001368513.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    95669..97944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001381286.1 → NP_001367546.1  Luc7-like protein 3 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8ITY5
    Conserved Domains (1) summary
    pfam03194
    Location:5 → 260
    LUC7; LUC7 N_terminus

  2. NM_001381287.1 → NP_001368513.1  Luc7-like protein 3 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AUJ4
    Conserved Domains (1) summary
    pfam03194
    Location:1 → 212
    LUC7; LUC7 N_terminus

RNA

  1. NR_132570.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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