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C55C3.1 BPI2 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 183851, updated on 2-Nov-2024

Summary

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Official Symbol
C55C3.1
Official Full Name
BPI2 domain-containing protein
Primary source
WormBase:WBGene00016951
Locus tag
CELE_C55C3.1
See related
AllianceGenome:WB:WBGene00016951
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable lipid binding activity. Predicted to be located in membrane. Predicted to be active in extracellular space. Orthologous to human LBP (lipopolysaccharide binding protein). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C55C3.1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
11
Sequence:
Chromosome: IV; NC_003282.8 (5709096..5714500)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BPI2 domain-containing protein
NP_500850.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    5709096..5714500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068449.2 → NP_500850.1  BPI2 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500850.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18869
    Conserved Domains (2) summary
    smart00328
    Location:50 → 283
    BPI1; BPI/LBP/CETP N-terminal domain
    pfam02886
    Location:293 → 545
    LBP_BPI_CETP_C; LBP / BPI / CETP family, C-terminal domain
Nucleotide Protein
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